Publications

List of publications Laboratory of Environmental Microbiology

Lopez Mondejar, R., Voriskova, J., Vetrovsky, T., Baldrian, P., 2015 The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics.
Soil Biology & Biochemistry, in press
Eichlerova, I., Homolka, L., Zifcakova, L., Lisa, L., Dobiasova, P., Baldrian, P., 2015. Enzymatic systems involved in decomposition reflects the ecology and taxonomy of saprotrophic fungi. Fungal Ecology 13, 10-22.

Hanackova, Z., Koukol, O., Stursova, M., Kolarik, M., Baldrian, P., 2015. Fungal succession in the needle litter of a montane Picea abies forest investigated through strain isolation and molecular fingerprinting. Fungal Ecology 13, 157-166.

Ntougias, S., Baldrian, P., Ehaliotis, C., Nerud, F., Merhautová, V., Zervakis, G.I., 2015 Olive mill wastewater biodegradation potential of white-rot fungi – Mode of action of fungal culture extracts and effects of ligninolytic enzymes, Bioresource Technology 189, 121-130

Urbanova, M., Snajdr, J., Baldrian, P., 2015 Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees. Soil Biology & Biochemistry 84, 53-64.

Baldrian, P., 2014. Distribution of Extracellular Enzymes in Soils: Spatial Heterogeneity and Determining Factors at Various Scales. Soil Science Society of America Journal 78, 11-18.

Baldrian, P., Lopez-Mondejar, R., 2014. Microbial genomics, transcriptomics and proteomics: new discoveries in decomposition research using complementary methods. Applied Microbiology and Biotechnology 98, 1531-1537.

Bradford, M.A., Warren, R.J., Baldrian, P., Crowther, T.W., Maynard, D.S., Oldfield, E.E., Wieder, W.R., Wood, S.A., King, J.R., 2014. Climate fails to predict wood decomposition at regional scales. Nature Climate Change 4, 625-630.

Eichlerova, I., Homolka, L., 2014. Preservation of basidiomycete strains on perlite using different protocols. Mycoscience 55, 439-448.
Homolka, L., 2014. Preservation of live cultures of basidiomycetes – Recent methods. Fungal Biology 118, 107-125.

Seibold, S., Bassler, C., Baldrian, P., Thorn, S., Muller, J., Gossner, M.M., 2014. Wood resource and not fungi attract early-successional saproxylic species of Heteroptera – an experimental approach. Insect Conservation and Diversity 7, 533-542.

Stursova, M., Snajdr, J., Cajthaml, T., Barta, J., Santruckova, H., Baldrian, P., 2014. When the forest dies: the response of forest soil fungi to a bark beetle-induced tree dieback. Isme Journal 8, 1920-1931.

Urbanova, M., Snajdr, J., Brabcova, V., Merhautova, V., Dobiasova, P., Cajthaml, T., Vanek, D., Frouz, J., Santruckova, H., Baldrian, P., 2014. Litter decomposition along a primary post-mining chronosequence. Biology and Fertility of Soils 50, 827-837.

Vetrovsky, T., Steffen, K.T., Baldrian, P., 2014. Potential of Cometabolic Transformation of Polysaccharides and Lignin in Lignocellulose by Soil Actinobacteria. Plos One 9.

Voriskova, J., Brabcova, V., Cajthaml, T., Baldrian, P., 2014. Seasonal dynamics of fungal communities in a temperate oak forest soil. New Phytologist 201, 269-278.

Baldrian, P., Snajdr, J., Merhautova, V., Dobiasova, P., Cajthaml, T., Valaskova, V., 2013a. Responses of the extracellular enzyme activities in hardwood forest to soil temperature and seasonality and the potential effects of climate change. Soil Biology & Biochemistry 56, 60-68.

Baldrian, P., Vetrovsky, T., Cajthaml, T., Dobiasova, P., Petrankova, M., Snajdr, J., Eichlerova, I., 2013b. Estimation of fungal biomass in forest litter and soil. Fungal Ecology 6, 1-11.
Crowther, T.W., Stanton, D.W.G., Thomas, S.M., A’Bear, A.D., Hiscox, J., Jones, T.H., Voriskova, J., Baldrian, P., Boddy, L., 2013. Top-down control of soil fungal community composition by a globally distributed keystone consumer. Ecology 94, 2518-2528.

Ekblad, A., Wallander, H., Godbold, D.L., Cruz, C., Johnson, D., Baldrian, P., Bjork, R.G., Epron, D., Kieliszewska-Rokicka, B., Kjoller, R., Kraigher, H., Matzner, E., Neumann, J., Plassard, C., 2013. The production and turnover of extramatrical mycelium of ectomycorrhizal fungi in forest soils: role in carbon cycling. Plant and Soil 366, 1-27.
Frouz, J., Liveckova, M., Albrechtova, J., Chronakova, A., Cajthaml, T., Pizl, V., Hanel, L., Stary, J., Baldrian, P., Lhotakova, Z., Simackova, H., Cepakova, S., 2013a. Is the effect of trees on soil properties mediated by soil fauna? A case study from post-mining sites. Forest Ecology and Management 309, 87-95.

Frouz, J., Thebault, E., Pizl, V., Adl, S., Cajthaml, T., Baldrian, P., Hanel, L., Stary, J., Tajovsky, K., Materna, J., Novakova, A., de Ruiter, P.C., 2013b. Soil Food Web Changes during Spontaneous Succession at Post Mining Sites: A Possible Ecosystem Engineering Effect on Food Web Organization? Plos One 8.

Hannula, S.E., de Boer, W., Baldrian, P., van Veen, J.A., 2013. Effect of genetic modification of potato starch on decomposition of leaves and tubers and on fungal decomposer communities. Soil Biology & Biochemistry 58, 88-98.

Kaneda, S., Frouz, J., Baldrian, P., Cajthaml, T., Kristufek, V., 2013. Does the addition of leaf litter affect soil respiration in the same way as addition of macrofauna excrements (of Bibio marci Diptera larvae) produced from the same litter? Applied Soil Ecology 72, 7-13.

Kotik, M., Davidova, A., Voriskova, J., Baldrian, P., 2013. Bacterial communities in tetrachloroethene-polluted groundwaters: A case study. Science of the Total Environment 454, 517-527.

Samonil, P., Schaetzl, R.J., Valtera, M., Golias, V., Baldrian, P., Vasickova, I., Adam, D., Janik, D., Hort, L., 2013. Crossdating of disturbances by tree uprooting: Can treethrow microtopography persist for 6000 years? Forest Ecology and Management 307, 123-135.

Snajdr, J., Dobiasova, P., Urbanova, M., Petrankova, M., Cajthaml, T., Frouz, J., Baldrian, P., 2013. Dominant trees affect microbial community composition and activity in post-mining afforested soils. Soil Biology & Biochemistry 56, 105-115.

Vetrovsky, T., Baldrian, P., 2013a. Analysis of soil fungal communities by amplicon pyrosequencing: current approaches to data analysis and the introduction of the pipeline SEED. Biology and Fertility of Soils 49, 1027-1037.

Vetrovsky, T., Baldrian, P., 2013b. The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses. Plos One 8.

Vetrovsky, T., Baldrian, P., Gabriel, J., 2013. Extracellular Enzymes of the White-Rot Fungus Fomes fomentarius and Purification of 1,4-beta-Glucosidase. Applied Biochemistry and Biotechnology 169, 100-109.

Voriskova, J., Baldrian, P., 2013. Fungal community on decomposing leaf litter undergoes rapid successional changes. Isme Journal 7, 477-486.

Wallander, H., Ekblad, A., Godbold, D.L., Johnson, D., Bahr, A., Baldrian, P., Bjork, R.G., Kieliszewska-Rokicka, B., Kjoller, R., Kraigher, H., Plassard, C., Rudawska, M., 2013. Evaluation of methods to estimate production, biomass and turnover of ectomycorrhizal mycelium in forests soils – A review. Soil Biology & Biochemistry 57, 1034-1047.

Baldrian, P., Kolarik, M., Stursova, M., Kopecky, J., Valaskova, V., Vetrovsky, T., Zifcakova, L., Snajdr, J., Ridl, J., Vlcek, C., Voriskova, J., 2012. Active and total microbial communities in forest soil are largely different and highly stratified during decomposition. Isme Journal 6, 248-258.

Baldrian, P., Vetrovsky, T., 2012. Scaling Down the Analysis of Environmental Processes: Monitoring Enzyme Activity in Natural Substrates on a Millimeter Resolution Scale. Applied and Environmental Microbiology 78, 3473-3475.

Eichlerova, I., Snajdr, J., Baldrian, P., 2012. Laccase activity in soils: Considerations for the measurement of enzyme activity. Chemosphere 88, 1154-1160.

Jeon, J.R., Baldrian, P., Murugesan, K., Chang, Y.S., 2012. Laccase-catalysed oxidations of naturally occurring phenols: from in vivo biosynthetic pathways to green synthetic applications. Microbial Biotechnology 5, 318-332.

Koukol, O., Baldrian, P., 2012. Intergeneric variability in enzyme production of microfungi from pine litter. Soil Biology & Biochemistry 49, 1-3.

Koukol, O., Kolarik, M., Kolarova, Z., Baldrian, P., 2012. Diversity of foliar endophytes in wind-fallen Picea abies trees. Fungal Diversity 54, 69-77.

Kulichevskaya, I.S., Kostina, L.A., Valaskova, V., Rijpstra, W.I.C., Damste, J.S.S., de Boer, W., Dedysh, S.N., 2012. Acidicapsa borealis gen. nov., sp nov and Acidicapsa ligni sp nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood. International Journal of Systematic and Evolutionary Microbiology 62, 1512-1520.

Ntougias, S., Baldrian, P., Ehaliotis, C., Nerud, F., Antoniou, T., Merhautova, V., Zervakis, G.I., 2012. Biodegradation and detoxification of olive mill wastewater by selected strains of the mushroom genera Ganoderma and Pleurotus. Chemosphere 88, 620-626.

Stursova, M., Zifcakova, L., Leigh, M.B., Burgess, R., Baldrian, P., 2012. Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers. Fems Microbiology Ecology 80, 735-746.

Zifcakova, L., Baldrian, P., 2012. Fungal polysaccharide monooxygenases: new players in the decomposition of cellulose. Fungal Ecology 5, 481-489.

Baldrian, P., Head, I.M., Prosser, J.I., Schloter, M., Smalla, K., Tebbe, C.C., 2011a. Ecology and metagenomics of soil microorganisms. Fems Microbiology Ecology 78, 1-2.

Baldrian, P., Lindahl, B., 2011. Decomposition in forest ecosystems: after decades of research still novel findings. Fungal Ecology 4, 359-361.

Baldrian, P., Snajdr, J., 2011. Lignocellulose-Degrading Enzymes in Soils, In: Shukla, G., Varma, A. (Eds.), Soil Enzymology. Springer-Verlag Berlin, Berlin, pp. 167-186.

Baldrian, P., Stursova, M., 2011. Enzymes in Forest Soils, In: Shukla, G., Varma, A. (Eds.), Soil Enzymology. Springer-Verlag Berlin, Berlin, pp. 61-73.

Baldrian, P., Voriskova, J., Dobiasova, P., Merhautova, V., Lisa, L., Valaskova, V., 2011b. Production of extracellular enzymes and degradation of biopolymers by saprotrophic microfungi from the upper layers of forest soil. Plant and Soil 338, 111-125.

Crowther, T.W., Jones, T.H., Boddy, L., Baldrian, P., 2011. Invertebrate grazing determines enzyme production by basidiomycete fungi. Soil Biology & Biochemistry 43, 2060-2068.

Snajdr, J., Cajthaml, T., Valaskova, V., Merhautova, V., Petrankova, M., Spetz, P., Leppänen, K., Baldrian, P., 2011a. Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition. Fems Microbiology Ecology 75, 291-303.

Snajdr, J., Dobiasova, P., Vetrovsky, T., Valaskova, V., Alawi, A., Boddy, L., Baldrian, P., 2011b. Saprotrophic basidiomycete mycelia and their interspecific interactions affect the spatial distribution of extracellular enzymes in soil. Fems Microbiology Ecology 78, 80-90.

Stursova, M., Baldrian, P., 2011. Effects of soil properties and management on the activity of soil organic matter transforming enzymes and the quantification of soil-bound and free activity. Plant and Soil 338, 99-110.

Uhnakova, B., Ludwig, R., Peknicova, J., Homolka, L., Lisa, L., Sulc, M., Petrickova, A., Elzeinova, F., Pelantova, H., Monti, D., Kren, V., Haltrich, D., Martinkova, L., 2011. Biodegradation of tetrabromobisphenol A by oxidases in basidiomycetous fungi and estrogenic activity of the biotransformation products. Bioresource Technology 102, 9409-9415.

Urbanova, M., Kopecky, J., Valaskova, V., Sagova-Mareckova, M., Elhottova, D., Kyselkova, M., Moenne-Loccoz, Y., Baldrian, P., 2011. Development of bacterial community during spontaneous succession on spoil heaps after brown coal mining. Fems Microbiology Ecology 78, 59-69.

Vetrovsky, T., Voriskova, J., Snajdr, J., Gabriel, J., Baldrian, P., 2011. Ecology of coarse wood decomposition by the saprotrophic fungus Fomes fomentarius. Biodegradation 22, 709-718.

Voriskova, J., Dobiasova, P., Snajdr, J., Vanek, D., Cajthaml, T., Santruckova, H., Baldrian, P., 2011. Chemical composition of litter affects the growth and enzyme production by the saprotrophic basidiomycete Hypholoma fasciculare. Fungal Ecology 4, 417-426.

Zifcakova, L., Dobiasova, P., Kolarova, Z., Koukol, O., Baldrian, P., 2011. Enzyme activities of fungi associated with Picea abies needles. Fungal Ecology 4, 427-436.
Zizka, Z., Gabriel, J., 2011. Autofluorescence of the fungus Morchella conica var. rigida. Folia Microbiologica 56, 166-169.

Baldrian, P., 2010. Effect of Heavy Metals on Saprotrophic Soil Fungi, In: Sherameti, I., Varma, A. (Eds.), Soil Heavy Metals. Springer-Verlag Berlin, Berlin, pp. 263-279.

Baldrian, P., Merhautova, V., Cajthaml, T., Petrankova, M., Snajdr, J., 2010a. Small-scale distribution of extracellular enzymes, fungal, and bacterial biomass in Quercus petraea forest topsoil. Biology and Fertility of Soils 46, 717-726.

Baldrian, P., Merhautova, V., Petrankova, M., Cajthaml, T., Snajdr, J., 2010b. Distribution of microbial biomass and activity of extracellular enzymes in a hardwood forest soil reflect soil moisture content. Applied Soil Ecology 46, 177-182.

Gryndler, M., Soukupova, L., Gryndlerova, H., Baldrian, P., Hrselova, H., 2010. Local Distribution of Ectomycorrhizae-Associated Basidiomycetes in Forest Soil Correlates with the Degree of Soil Organic Matter Humification and Available Electrolytes. Folia Microbiologica 55, 454-460.

Hiscox, J., Baldrian, P., Rogers, H.J., Boddy, L., 2010. Changes in oxidative enzyme activity during interspecific mycelial interactions involving the white-rot fungus Trametes versicolor. Fungal Genetics and Biology 47, 562-571.

Homolka, L., Lisa, L., Eichlerova, I., Valaskova, V., Baldrian, P., 2010. Effect of long-term preservation of basidiomycetes on perlite in liquid nitrogen on their growth, morphological, enzymatic and genetic Characteristics. Fungal Biology 114, 929-935.

Shah, V., Dobiasova, P., Baldrian, P., Nerud, F., Kumar, A., Seal, S., 2010. Influence of iron and copper nanoparticle powder on the production of lignocellulose degrading enzymes in the fungus Trametes versicolor. Journal of Hazardous Materials 178, 1141-1145.

Snajdr, J., Steffen, K.T., Hofrichter, M., Baldrian, P., 2010. Transformation of (14)C-labelled lignin and humic substances in forest soil by the saprobic basidiomycetes Gymnopus erythropus and Hypholoma fasciculare. Soil Biology & Biochemistry 42, 1541-1548.

Zizka, Z., Vetrovsky, T., Gabriel, J., 2010. Enhancement of autofluorescence of the brown-rot fungus Piptoporus betulinus by metal ions. Folia Microbiologica 55, 625-628.

Baldrian, P., 2009a. Ectomycorrhizal fungi and their enzymes in soils: is there enough evidence for their role as facultative soil saprotrophs? Oecologia 161, 657-660.

Baldrian, P., 2009b. Microbial enzyme-catalyzed processes in soils and their analysis. Plant Soil and Environment 55, 370-378.

Tomsovsky, M., Popelarova, P., Baldrian, P., 2009. Production and Regulation of Lignocellulose-Degrading Enzymes of Poria-Like Wood-Inhabiting Basidiomycetes. Folia Microbiologica 54, 74-80.

Uhnakova, B., Petrickova, A., Biedermann, D., Homolka, L., Vejvoda, V., Bednar, P., Papouskova, B., Sulc, M., Martinkova, L., 2009. Biodegradation of brominated aromatics by cultures and laccase of Trametes versicolor. Chemosphere 76, 826-832.

Valaskova, V., Baldrian, P., 2009. Denaturing gradient gel electrophoresis as a fingerprinting method for the analysis of soil microbial communities. Plant Soil and Environment 55, 413-423.

Valaskova, V., de Boer, W., Gunnewiek, P., Pospisek, M., Baldrian, P., 2009. Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood.
Isme Journal 3, 1218-1221.

Baldrian, P., 2008. Wood-inhabiting ligninolytic basidiomycetes in soils: Ecology and constraints for applicability in bioremediation. Fungal Ecology 1, 4-12.

Baldrian, P., Merhautova, V., Cajthaml, T., Nerud, F., Stopka, P., Gorbacheva, O., Hruby, M., Benes, M.J., 2008a. Synthesis of zirconia-immobilized copper chelates for catalytic decomposition of hydrogen peroxide and the oxidation of polycyclic aromatic hydrocarbons. Chemosphere 72, 1721-1726.

Baldrian, P., Trogl, J., Frouz, J., Snajdr, J., Valaskova, V., Merhautova, V., Cajthaml, T., Herinkova, J., 2008b. Enzyme activities and microbial biomass in topsoil layer during spontaneous succession in spoil heaps after brown coal mining. Soil Biology & Biochemistry 40, 2107-2115.

Baldrian, P., Valaskova, V., 2008. Degradation of cellulose by basidiomycetous fungi.
Fems Microbiology Reviews 32, 501-521.

Byss, M., Elhottova, D., Triska, J., Baldrian, P., 2008. Fungal bioremediation of the creosote-contaminated soil: Influence of Pleurotus ostreatus and Irpex lacteus on polycyclic aromatic hydrocarbons removal and soil microbial community composition in the laboratory-scale study. Chemosphere 73, 1518-1523.

Homolka, L., Lisa, L., 2008. Long-term Maintenance of Fungal Cultures on Perlite in Cryovials – an Alternative for Agar Slants. Folia Microbiologica 53, 534-536.

Snajdr, J., Valaskova, V., Merhautova, V., Cajthaml, T., Baldrian, P., 2008a. Activity and spatial distribution of lignocellulose-degrading enzymes during forest soil colonization by saprotrophic basidiomycetes. Enzyme and Microbial Technology 43, 186-192.

Snajdr, J., Valaskova, V., Merhautova, V., Herinkova, J., Cajthaml, T., Baldrian, P., 2008b. Spatial variability of enzyme activities and microbial biomass in the upper layers of Quercus petraea forest soil. Soil Biology & Biochemistry 40, 2068-2075.

Soukupova, L., Hrselova, H., Gryndlerova, H., Merhautova, V., Gryndler, M., 2008. Alkali-extractable soil organic matter: An important factor affecting the mycelial growth of ectomycorrhizal fungi. Applied Soil Ecology 40, 37-43.

Zizka, Z., Gabriel, J., 2008. Autofluorescence of the Fruiting Body of the Fungus Macrolepiota rhacodes. Folia Microbiologica 53, 537-539.
Eichlerova, I., Homolka, L., Benada, O., Kofronova, O., Hubalek, T., Nerud, F., 2007a. Decolorization of Orange G and Remazol Brilliant Blue R by the white rot fungus Dichomitus squalens: Toxicological evaluation and morphological study. Chemosphere 69, 795-802.

Eichlerova, I., Homolka, L., Nerud, F., 2007b. Decolorization of high concentrations of synthetic dyes by the white rot fungus Bjerkandera adusta strain CCBAS 232. Dyes and Pigments 75, 38-44.

Homolka, L., Lisa, L., Nerud, F., 2007. Basidiomycete cultures on perlite survive successfully repeated freezing and thawing in cryovials without subculturing. Journal of Microbiological Methods 69, 529-532.

Kokol, V., Doliska, A., Eichlerova, I., Baldrian, P., Nerud, F., 2007. Decolorization of textile dyes by whole cultures of Ischnoderma resinosum and by purified laccase and Mn-peroxidase. Enzyme and Microbial Technology 40, 1673-1677.

Rezacova, V., Baldrian, P., Hrselova, H., Larsen, J., Gryndler, M., 2007. Influence of mineral and organic fertilization on soil fungi, enzyme activities and humic substances in a long-term field experiment. Folia Microbiologica 52, 415-421.

Snajdr, J., Baldrian, P., 2007. Temperature affects the production, activity and stability of Ligninolytic enzymes in Pleurotus ostreatus and Trametes versicolor. Folia Microbiologica 52, 498-502.

Steffen, K.T., Cajthaml, T., Šnajdr, J., Baldrian, P., 2007. Differential degradation of oak (Quercus petraea) leaf litter by litter-decomposing basidiomycetes. Research in Microbiology 158, 447-455.

Valaskova, V., Snajdr, J., Bittner, B., Cajthaml, T., Merhautova, V., Hoffichter, M., Baldrian, P., 2007. Production of lignocellulose-degrading enzymes and degradation of leaf litter by saprotrophic basidiomycetes isolated from a Quercus petraea forest. Soil Biology & Biochemistry 39, 2651-2660.

Baborova, P., Moder, M., Baldrian, P., Cajthamlova, K., Cajthaml, T., 2006. Purification of a new manganese peroxidase of the white-rot fungus Irpex lacteus, and degradation of polycyclic aromatic hydrocarbons by the enzyme. Research in Microbiology 157, 248-253.

Baldrian, P., 2006. Fungal laccases – occurrence and properties.
Fems Microbiology Reviews 30, 215-242.

Baldrian, P., Merhautova, V., Gabriel, J., Nerud, F., Stopka, P., Hruby, M., Benes, M.J., 2006a. Decolorization of synthetic dyes by hydrogen peroxide with heterogeneous catalysis by mixed iron oxides. Applied Catalysis B-Environmental 66, 258-264.

Baldrian, P., Snajdr, J., 2006. Production of ligninolytic enzymes by litter-decomposing fungi and their ability to decolorize synthetic dyes. Enzyme and Microbial Technology 39, 1023-1029.

Baldrian, P., Snajdr, J., Valaskova, V., 2006b. Fungal ligninolytic enzymes in the forest soil environment: Occurrence, distribution and role in soil organic matter transformation.
Medimond S R L, 40128 Bologna, 135-138 pp.

Baldrian, P., Zervakis, G.I., Merhautova, V., Ntougias, S., Ehaliotis, C., Nerud, F., 2006c. The use of hydroxyl-radical-generating systems for the treatment of olive mill wastewaters.
Folia Microbiologica 51, 337-341.

Eichlerova, I., Homolka, L., Lisa, L., Nerud, F., 2006a. The influence of extracellular H2O2 production on decolorization ability in fungi. Journal of Basic Microbiology 46, 449-455.

Eichlerova, I., Homolka, L., Nerud, F., 2006b. Ability of industrial dyes decolorization and ligninolytic enzymes production by different Pleurotus species with special attention on Pleurotus calyptratus, strain CCBAS 461. Process Biochemistry 41, 941-946.

Eichlerova, I., Homolka, L., Nerud, F., 2006c. Evaluation of synthetic dye decolorization capacity in Ischnoderma resinosum. Journal of Industrial Microbiology & Biotechnology 33, 759-766.

Eichlerova, I., Homolka, L., Nerud, F., 2006d. Synthetic dye decolorization capacity of white rot fungus Dichomitus squalens. Bioresource Technology 97, 2153-2159.

Homolka, L., Lisa, L., Nerud, F., 2006. Basidiomycete cryopreservation on perlite: Evaluation of a new method. Cryobiology 52, 446-453.

Shah, V., Baldrian, P., Eichlerova, I., Dave, R., Madamwar, D., Nerud, F., Gross, R., 2006. Influence of dimethyl sulfoxide on extracellular enzyme production by Pleurotus ostreatus.
Biotechnology Letters 28, 651-655.

Snajdr, J., Baldrian, P., 2006. Production of lignocellulose-degrading enzymes and changes in soil bacterial communities during the growth of Pleurotus ostreatus in soil with different carbon content. Folia Microbiologica 51, 579-590.

Tomsovsky, M., Kolarik, M., Pazoutova, S., Homolka, L., 2006. Molecular phylogeny of European Trametes (Basidiomycetes, Polyporales) species based on LSU and ITS (nrDNA) sequences.
Nova Hedwigia 82, 269-280.

Valaskova, V., Baldrian, P., 2006a. Estimation of bound and free fractions of lignocellulose-degrading enzymes of wood-rotting fungi Pleurotus ostreatus, Trametes versicolor and Piptoporus betulinus. Research in Microbiology 157, 119-124.

Valaskova, V., Baldrian, P., 2006b. Degradation of cellulose and hemicelluloses by the brown rot fungus Piptoporus betulinus – production of extracellular enzymes and characterization of the major cellulases. Microbiology-Sgm 152, 3613-3622.

Zizka, Z., Gabriel, J., 2006. Primary fluorescence (autofluorescence) of fruiting bodies of the wood-rotting fungus Fomes fomentarius. Folia Microbiologica 51, 109-113.

Baldrian, P., Cajthaml, T., Merhautova, V., Gabriel, J., Nerud, F., Stopka, P., Hruby, M., Benes, M.J., 2005a. Degradation of polycyclic aromatic hydrocarbons by hydrogen peroxide catalyzed by heterogeneous polymeric metal chelates. Applied Catalysis B-Environmental 59, 267-274.

Baldrian, P., Valaskova, V., Merhautova, V., Gabriel, J., 2005b. Degradation of lignocellulose by Pleurotus ostreatus in the presence of copper, manganese, lead and zinc. Research in Microbiology 156, 670-676.

Eichlerova, I., Homolka, L., Lisa, L., Nerud, F., 2005. Orange G and Remazol Brilliant Blue R decolorization by white rot fungi Dichomitus squalens, Ischnoderma resinosum and Pleurotus calyptratus. Chemosphere 60, 398-404.

Gryndler, M., Hrselova, H., Sudova, R., Gryndlerova, H., Rezacova, V., Merhautova, V., 2005. Hyphal growth and mycorrhiza formation by the arbuscular mycorrhizal fungus Glomus claroideum BEG 23 is stimulated by humic substances. Mycorrhiza 15, 483-488.

Kral, J., Voltr, J., Proska, J., Gabriel, J., Baldrian, P., Cerny, J., Svejda, J., 2005. PIXE determination of element distribution in Fomes fomentarius. X-Ray Spectrometry 34, 341-344.

Baldrian, P., 2004a. Increase of laccase activity during interspecific interactions of white-rot fungi. Fems Microbiology Ecology 50, 245-253.

Baldrian, P., 2004b. Purification and characterization of laccase from the white-rot fungus Daedalea quercina and decolorization of synthetic dyes by the enzyme. Applied Microbiology and Biotechnology 63, 560-563.

Curdova, E., Vavruskova, L., Suchanek, M., Baldrian, P., Gabriel, J., 2004. ICP-MS determination of heavy metals in submerged cultures of wood-rotting fungi. Talanta 62, 483-487.

Gabriel, J., Baldrian, P., Verma, P., Cajthaml, T., Merhautova, V., Eichlerova, I., Stoytchev, I., Trnka, T., Stopka, P., Nerud, F., 2004. Degradation of BTEX and PAHs by Co(II) and Cu(II)-based radical-generating systems. Applied Catalysis B-Environmental 51, 159-164.

Nerud, F., Baldrian, P., Eichlerova, I., Merhautova, V., Gabriel, J., Homolka, L., 2004. Decolorization of dyes using white-root fungi and radical-generating reactions. Biocatalysis and Biotransformation 22, 325-330.

Tomsovsky, M., Homolka, L., 2004a. Cultural characteristics, sexuality and ligninolytic enzyme production of Trametes cervina. Cryptogamie Mycologie 25, 49-55.

Tomsovsky, M., Homolka, L., 2004b. Mating tests among geographically separated collections of the Trametes versicolor (Fr.) Pilat (Basidiomycetes, Polyporales) group. Nova Hedwigia 79, 425-431.

Tomsovsky, M., Homolka, L., 2004c. Tyrosinase activity discovered in Trametes spp. World Journal of Microbiology & Biotechnology 20, 529-530.

Verma, P., Baldrian, P., Gabriel, J., Trnka, T., Nerud, F., 2004a. Copper-ligand complex for the decolorization of synthetic dyes. Chemosphere 57, 1207-1211.

Verma, P., Shah, V., Baldrian, P., Gabriel, J., Stopka, P., Trnka, T., Nerud, F., 2004b. Decolorization of synthetic dyes using a copper complex with glucaric acid. Chemosphere 54, 291-295.

Baldrian, P., 2003. Interactions of heavy metals with white-rot fungi. Enzyme and Microbial Technology 32, 78-91.

Baldrian, P., Gabriel, J., 2003a. Adsorption of heavy metals to microbial biomass – Use of biosorption for removal of metals from solutions, In: Sasek, V., Glaser, J.A., Baveye, P. (Eds.), Utilization of Bioremediation to Reduce Soil Contamination: Problems and Solutions.
Springer, Dordrecht, pp. 115-125.

Baldrian, P., Gabriel, J., 2003b. Lignocellulose degradation by Pleurotus ostreatus in the presence of cadmium. Fems Microbiology Letters 220, 235-240.

Eichlerova, I., Homolka, L., Nerud, F., 2003. Decolorization of Orange G by Pleurotus ostreatus monokaryotic isolates with different laccase activity. Folia Microbiologica 48, 775-779.

process. Applied Microbiology and Biotechnology 59, 353-360.
Homolka, L., Lisa, L., Nerud, F., 2003. Viability of basidiomycete strains after cryopreservation: Comparison of two different freezing protocols. Folia Microbiologica 48, 219-226.

Shah, V., Verma, P., Stopka, P., Gabriel, J., Baldrian, P., Nerud, F., 2003. Decolorization of dyes with copper(II)/organic acid/hydrogen peroxide systems. Applied Catalysis B-Environmental 46, 287-292.

Nerud, F., Baldrian, P., Gabriel, J., Ogbeifun, D., 2003. Nonenzymic degradation and decolorization of recalcitrant compounds, In: Sasek, V., Glaser, J.A., Baveye, P. (Eds.), Utilization of Bioremediation to Reduce Soil Contamination: Problems and Solutions. Springer, Dordrecht, pp. 127-133.

Tomsovsky, M., Homolka, L., 2003. Laccase and other ligninolytic enzyme activities of selected strains of Trametes spp. from different localities and substrates. Folia Microbiologica 48, 413-416.

Verma, P., Baldrian, P., Nerud, F., 2003. Decolorization of structurally different synthetic dyes using cobalt(II)/ascorbic acid/hydrogen peroxide system. Chemosphere 50, 975-979.

Zizka, Z., Hostounsky, Z., Gabriel, J., 2003. ARC-microscopy – a novel microscopic technique used in microbiological studies. Folia Microbiologica 48, 829-838.

Baldrian, P., Gabriel, J., 2002a. Copper and cadmium increase laccase activity in Pleurotus ostreatus. Fems Microbiology Letters 206, 69-74.

Baldrian, P., Gabriel, J., 2002b. Intraspecific variability in growth response to cadmium of the wood-rotting fungus Piptoporus betulinus. Mycologia 94, 428-436.

Baldrian, P., Gabriel, J., 2002c. Variability of laccase activity in the white-rot basidiomycete Pleurotus ostreatus. Folia Microbiologica 47, 385-390.

Eichlerova, I., Homolka, L., Nerud, F., 2002. Decolorization of synthetic dyes by Pleurotus ostreatus isolates differing in ligninolytic properties. Folia Microbiologica 47, 691-695.

Shah, V., Nerud, F., 2002. Lignin degrading system of white-rot fungi and its exploitation for dye decolorization. Canadian Journal of Microbiology 48, 857-870.

Vacchina, V., Baldrian, P., Gabriel, J., Szpunar, J., 2002. Investigation of the response of wood-rotting fungi to copper stress by size-exclusion chromatography and capillary zone electrophoresis with ICP MS detection. Analytical and Bioanalytical Chemistry 372, 453-456.

Gabriel, J., Baldrian, P., Hladikova, K., Hakova, M., 2001. Copper sorption by native and modified pellets of wood-rotting basidiomycetes. Letters in Applied Microbiology 32, 194-198.

Homolka, L., Lisa, L., Eichlerova, I., Nerud, F., 2001. Cryopreservation of basidiomycete strains using perlite. Journal of Microbiological Methods 47, 307-313.

Kubatova, A., Erbanova, P., Eichlerova, I., Homolka, L., Nerud, F., Sasek, V., 2001. PCB congener selective biodegradation by the white rot fungus Pleurotus ostreatus in contaminated soil. Chemosphere 43, 207-215.
Nerud, F., Baldrian, P., Gabriel, J., Ogbeifun, D., 2001. Decolorization of synthetic dyes by the Fenton reagent and the Cu/pyridine/H2O2 system. Chemosphere 44, 957-961.

Stoytchev, I., Homolka, L., Nerud, F., 2001. Geastrum pouzarii Stanek in agar culture. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology 79, 363-364.

Baldrian, P., der Wiesche, C.I., Gabriel, J., Nerud, F., Zadrazil, F., 2000. Influence of cadmium and mercury on activities of ligninolytic enzymes and degradation of polycyclic aromatic hydrocarbons by Pleurotus ostreatus in soil. Applied and Environmental Microbiology 66, 2471-2478.

Eichlerova, I., Ruel, K., Homolka, L., Joseleau, J.P., Nerud, F., 2000b. Ligninolytic characteristics of Pleurotus ostreatus strain F6 and its monokaryotic protoplast derivative P19. Canadian Journal of Microbiology 46, 1153-1158.

Gabriel, J., Shah, V., Nesmerak, K., Baldrian, P., Nerud, F., 2000. Degradation of polycyclic aromatic hydrocarbons by the copper(II)-hydrogen peroxide system. Folia Microbiologica 45, 573-575.

Isikhuemhen, O.S., Moncalvo, J.M., Nerud, F., Vilgalys, R., 2000a. Mating compatibility and phylogeography in Pleurotus tuberregium. Mycological Research 104, 732-737.

Isikhuemhen, O.S., Nerud, F., Vilgalys, R., 2000b. Cultivation studies on wild and hybrid strains of Pleurotus tuberregium (Fr.) Sing. on wheat straw substrate. World Journal of Microbiology & Biotechnology 16, 431-435.

Stoytchev, I., Nerud, F., 2000. Ligninolytic enzyme complex of Armillaria spp.
Folia Microbiologica 45, 248-250.

Baldrian, P., Gabriel, J., Pospisek, M., 1999. Improved isolation of nucleic acids from basidiomycete fungi. Biotechniques 27, 458-+.

Mandal, T.K., Baldrian, P., Gabriel, J., Nerud, F., Zadrazil, F., 1998. Effect of mercury on the growth of wood-rotting basidiomycetes Pleurotus ostreatus, Pycnoporus cinnabarinus and Serpula lacrymans. Chemosphere 36, 435-440.

Baldrian, P., Gabriel, J., 1997. Effect of heavy metals on the growth of selected wood-rotting basidiomycetes. Folia Microbiologica 42, 521-523.

Gabriel, J., Baldrian, P., Rychlovsky, P., Krenzelok, M., 1997. Heavy metal content in wood-decaying fungi collected in Prague and in the National Park Sumava in the Czech Republic. Bulletin of Environmental Contamination and Toxicology 59, 595-602.

Baldrian, P., Gabriel, J., Nerud, F., 1996. Effect of cadmium on the ligninolytic activity of Stereum hirsutum and Phanerochaete chrysosporium. Folia Microbiologica 41, 363-367.

Gabriel, J., Vosahlo, J., Baldrian, P., 1996. Biosorption of cadmium to mycelial pellets of wood-rotting fungi. Biotechnology Techniques 10, 345-348.